March 25^th, Wednesday

Mar. 25 (Wednesday) 14:00-18:00, Main Cenference Room A
Chair: In-Cheol Kang, Hoseo University, Korea

• (ES-1-1) 14:00 - 15:00 Introduction and Current Trends of 2-DE based Proteomics
  Eun-Young Lee, Yonsei Proteome Research Center, Yonsei University, Korea
  
  
• (ES-1-2) 15:00 - 16:00 Introduction and Current Trends of non 2-DE based Proteomics
  Je Hyun Baek, Functional Proteomics Center, KIST, Korea
  
  

• (ES-2-1) 16:00 - 17:00 Analysis of Plasma Proteome
  Chan Wha Kim, Korea University, Korea
  
  
• (ES-2-2) 17:00 - 18:00 From the Experiment Design to the Writing of a Paper
  Tai-Youn Rhim, Hanyang University, Korea
  
  

- In commemoration of 10th Anniversary of YPRC -

In Hoam Faculty House

Chaired by Prof. Young-Ki Paik, HUPO President

Supported by Biomedical Proteome Research Center (A030003) and Yonsei Proteome Research Center



March 26^th, Thursday

Mar. 26 (Thursday) 09:00-10:00, Main Cenference Room(A)
Chair: Choon Sik Park, Soon Chun Hyang University, Korea

• (SY-1-1) 09:00 - 09:20 Proteomic Analysis of Microvesicles Derived from Colorectal Cancer Ascites
  Yong Song Gho, Pohang University of Science and Technology, Korea
  
  
• (SY-1-2) 09:20 - 09:40 14-3-3 gamma is Stimulated by IL-3 and Promotes Cell Proliferation and Oncogenicity
  Kwang-Hyun Baek, CHA University / CHA General Hospital, Korea
  
  
• (SY-1-3) 09:40 - 10:00Identification of System Biology-based Biomarker Candidates for IgAN and TBMN using Human Urinary Exosomes
  Moon-Chang Baek, Kyungpook National University, Korea
  
  

Cenference Room A
Chair: Kyung-Soo Hahm, Chosun University, Korea

• (PL-1) 11:00 - 11:30 Mining the cancer epitheliome for blood based biomarkers
  Sam Hanash, Fred Hutchinson Cancer Research Center, USA
  
  
• (PL-2) 11:30 - 12:00 Strategies for Proteomic Profiling of Cancer Specimens and Plasma in Mouse Models of Human Cancers: Identification of Novel Alternative Splice Isoforms as a New Class of Biomarker Candidates
  Gil Omenn, Univ. of Michigan, USA
  
  

Mar. 26 (Thursday) 12:15-13:10, Main Cenference Room(A,B)

* Lunch Box will be given to all of participants in cooperate workshop.

• (CW-1) 12:15 . 13:10 , Conference Room A
  AB SCIEX QTRAP® 5500 System: Above and beyond the extraordinary
  Byunghee Shin, Applied Biosystems Korea & LSK
  
  
• (CW-2) 12:15 . 13:10 Conference Room B
  Accurate Mass Analysis of Natural Product by LCMS-IT-TOF (For Post Translational Modification)
  Jae Yong Lee, Dongil-Shimadzu Corp.
  
  

Cenference Room A
Chair: Myeong-Hee Yu, Functional Proteomics Center, KIST, Korea

Supported by Functional Proteomics Center

• (DS-1-1) 13:30 - 14:00 An Integrative Platform for Protein Identification, Quantitation, and Elucidation with Seamless and Fast Data Processing
  Myeong-Hee Yu, Functional Proteomics Center, KIST, Korea
  
  
• (DS-1-2) 14:00 - 14:20 An Integrative Approach for Understanding Mitochondrial Diseases using Novel Proteomic Profiling Methods
  Daehee Hwang, Pohang University of Science and Technology, Korea
  
  
• (DS-1-3) 14:20 - 14:40Discovery of Biomarkers for Colon and Breast Cancers
  Cheolju Lee, Korea Institute of Science Technology, Korea
  
  
• (DS-1-4) 14:40 - 15:00 Ligand Proteomics with Library and Profiling
  Sung Ho Ryu, Pohang University of Science and Technology, Korea
  
  

Conference Room B
Chair: Young Joo Kim, Korea Research Institute of Bioscience & Biotechnology

Supported by Korea Forum for Bio-informatics Standardization

• (SA-1-1) 13:30 - 14:00 The Increasing Sequencing and Centralizing Computing
  Guoqing Li, Beijing Genomics Institute in Shenzhen, China
  
  
• (SA-1-2) 14:00 - 14:30 Integration Efforts of the Bioinformatics Databases in Japan
  Toshiaki Katayama, Univ. of Tokyo, Japan
  
  
• (SA-1-3) 14:30 - 14:45Research Database System at Center for Genome Science, KNIH
  Jong Phil Choi, Korea National Institute of Health, Korea
  
  
• (SA-1-4) 14:45 - 15:00 Toward Information Standardization in Agricultural Genetic Resources and Genomics
  Jang Ho Hahn, Korean Agricultural Culture Collection, Ko
  
  

Mar. 26 (Thursday) 15:40-17:20, Main Cenference Room(A)
Chair: TBA, Korea Research Institute of Bioscience & Biotechnology

Supported by Korea Research Institute of Bioscience and Biotechnology

• (SY-2-1) 15:40 -16:05 NCI's CPTC - Advancing Protein Science for Personalized Medicine
  Henry Rodriguez, National Cancer Institute, USA
  
  
• (SY-2-2) 16:05 - 16:25 Key Methodological Elements for a Human Proteome Project: Quantitative Proteomics, High Quality Protein Interaction and Annotation Databases
  Pierre Legrain, CEA, France
  
  
• (SY-2-3) 16:25 . 16:45 Quantification of Post-translationally Modified Peptides of Bovine α-Crystallin Using Tandem Mass Tags and Electron Transfer Dissociation
  Vlad Zabroskov, Thermo Finnigan, USA
  
  
• (SY-2-4) 16:45 . 17:00 Verification of Biomarkers for Diabetic Complications by Quantitative Proteomics
  Youngsoo Kim, Seoul National University, Korea
  
  
• (SY-2-5) 17:00 . 17:15 Discovery in BMP2-induced Cellular Transdifferrentiation Using Two-stage/Double Technique-Hybrid Strategy
  Je-Yoel Cho, Kyungpook National University, Korea
  
  

Mar. 26 (Thursday) 15:40-17:20, Cenference Room(B)
Chair: Sang Yun Cho, Yonsei Proteome Research Center, Korea

Supported by Korea Forum for Bio-informatics Standardization

• (SY-3-1) 15:40 - 16:10 Proteomics by the Numbers: the Use of Bioinformatics to Analyze, Understand and Predict Proteomics Experiments
  Lennart Martens, EMBL-EBI, UK
  
  
• (SY-3-2) 16:10 - 16:40 Standards and Databases for Biological Network Modeling
  Hsuan-Cheng Huang, National Yang-Ming University, ROC
  
  
• (SY-3-3) 16:40 - 16:55 Integration and Standardization for Korean Biological Data at KOBIC
  Byungwook Lee, Korean BioInformation Center, Korea
  
  
• (SY-3-4) 16:55 - 17:10 Lessons learned in the International Collaboration for the Standardization of Biological Information Resources
  Hideaki Sugawara, National Institute of Genetics, Japan
  
  
• (SY-3-5) 17:10 - 17:20 Korean Forum for Bioinformation Standardization
  Kyung-Hoon Kwon, Korea Basic Science Institute, Korea
  
  

Cenference Room A
Chair: Hun-Taeg Chung, Wonkwang University, Korea

• (PL-3) 17:30 . 18:00 The Nitroproteome of the Human Pituitary
  Dominic M. Desiderio, The Univ. of Tennessee, USA
  
  

Congratulatory Messages from Former Presidents of HUPO (Sam Hanash, John J.M. Bergeron, Rolf Apweiler) and President of HUPO (Young-Ki Paik)


Message from President of KHUPO (Jong-Shin Yoo)
Congratulatory Messages from HUPO President and Distinguished Invited Speakers


A glass of wine and beer will be provided to all of participants with delicious foods. And bingo game will be performed at welcome reception. Small rewards will be given to the first and second winner of this game.


March 27^th, Friday

Mar. 27 (Friday) 08:30-09:25, Main Cenference Room(A)
Chair: Seong Eon Ryu, Korea Research Institute of Bioscience & Biotechnology

• (SY-4-1) 08:30 - 08:48 Stoichiometry of Phosphorylation Sites in Protein Complexes by iTRAQ Labeling and MALDI TOF/TOF Mass Spectrometry
  Hoo-Keun Lee, Lee Gil Ya Cancer and Diabetes Institute, Gachon University of Medicine and Science, Korea
  
  
• (SY-4-2) 08:48 . 09:06 Hydroxylational Modification of Hypoxia-Inducible Factor-1a by Using Oxygen and a-Ketoglutarate
  Hyun-Sung Park, Univ. of Seoul, Korea
  
  
• (SY-4-3) 09:06 - 09:24 Glycomics-based Functional Study on Cancer Progression in Colon Cancer as exemplified by TIMP-1 and PTPk
  Yong-Sam Kim, Korea Research Institute of Bioscience & Biotechnology, Korea
  
  

Mar. 27 (Friday) 08:30-09:25, Cenference Room(B)
Chair: Bong Chul Chung, Korea Institute of Science and Technology and
Geum-Sook Hwang, Korea Basic Science Institute

• (SY-5-1) 08:30 - 08:48 Hair Metabolomics in Biomarker Discovery
  Man Ho Choi, Korea Institute of Science Technology, Korea
  
  
• (SY-5-2) 08:48 - 09:06 LC/MS based Metabolome Library and its Application for Functional Metabolomics
  Choong-Hwan Lee, Konkuk University, Korea
  
  
• (SY-5-3) 09:06 - 09:24 Application of Metabolic Profiling using NMR
  Geum-Sook Hwang, Korea Basic Science Institute, Korea
  
  

Cenference Room A
Chair: Young Mok Park, Korea Basic Science Institute

• (PL-4) 09:30 - 10:00 Proteomic, Metabolomic and Functional Investigations of Nitrite-Induced Cardioprotection
  Catherine Costello, Boston University, USA
  
  
• (PL-5) 10:00 - 10:30 The Dynamic Proteome: Mass Spectrometry Technologies to Study Post-translational Modifications
  Ole Noerregaard Jensen, Univ. of Southern Denmark, Denmark
  
  

Cenference Room A
Chair: Moon Hi Han, Proteogen Inc., Korea

• (PL-6) 11:30 - 12:00Protein interactions and functional pathways in bacteria, yeast, and mice
  Jack Greenblat, Univ. of Toronto, Canada
  
  
• (PL-7) 12:00 - 12:30 A Human Protein Atlas created using antibody-based proteomics
  Mathias Uhlen, Royal Institute of Technology (KTH), Sweden
  
  

Mar. 27 (Friday) 12:45-13:40, Main Cenference Room(A,B)

* Lunch Box will be given to all of participants in cooperate workshop.

• (CW-3) 12:45-13:40 , Conference Room A
  Targeted MRM-Based Quantitative Proteomics and Biomarker Verification using Waters VerifyE solution
  TBA, Waters
  
  
• (CW-4) 12:45-13:40 Conference Room B
  Optimization Strategies of LC-MS/MS Front End Separation to Achieve High Resolution, High Selectivity and High Throughput
  Angelika Koepf, Asia Pacific Technical Center, Dionex Corporation, Thailand
  
  

Mar. 27 (Friday) 14:00-15:40, Main Cenference Room(A)
Chair: Young-Joon Kim, Yonsei University, Korea

• (SY-6-1) 14:00 - 14:25 Variome Analysis of Korean Genome using Next Generation Sequencers
  Jong Bhak, Korean BioInformation Center, Korea
  
  
• (SY-6-2) 14:25 - 14: 50 Proteomic Analysis of the Mxi1-deficient Mouse: ApoA1 Reduction can induce the Inflammation and Renal Fibrosis in Polycystic Kidney
  Jong-Hoon Park, Sookmyung Women’s University, Korea
  
  
• (SY-6-3) 14:50 - 15:15 TBA
  Young-Joon Kim, Yonsei University, Korea
  
  
• (SY-6-4) 15:15 - 15:40 An Integrative and Systems Bioinformatics Approach for Interpreting Omics data
  Sanghyuk Lee, Ewah Womans University, Korea
  
  

Mar. 27 (Friday) 14:00-15:40, Cenference Room(B)
Chair: In Seok Lee, Yonsei University

• (SY-7-1) 14:00 . 14:30 The signaling and transcription in the wild-type and tamoxifen-resistant breast cancer cells
  Takeshi Nagashima, RIKEN, Japan
  
  
• (SY-7-2) 14:30 . 15:00 Complex Genetic Network of Leaf Senescence and Age-associated Cell Death: Trifurcate feed-forward Regulation involving a NAC Transcription Factor, MIR164, and ein2 in Arabidopsis
  Hong Gil Nam, Pohang Univ. of Science and Technology, Korea
  
  
• (SY-7-3) 15:00 . 15:20 Protein Complexes and their Role in Tumor Progression and Stem Cell Differentiation
  Kyunghee Byun, Lee Gil Ya Cancer and Diabetes Institute, Gachon University of Medicine and Science, Korea
  
  
• (SY-7-4) 15:20 . 15:40 An Integrated Functional Gene Network Predicts Tissue-specific Disease Phenotypes of Human
  In Seok Lee, Yonsei University, Korea
  
  

Cenference Room A
Chair: Jong Shin Yoo, Korea Basic Science Institute

• (PL-8) 15:55 - 16:25 Annotating the Human Proteome
  Rolf Apweiler, EMBL-EBI, UK
  
  
• (PL-9) 16:25 - 16:55 A Human Proteome Project and the Protein Microscope
  John Bergeron, McGill University, Canada
  
  

Cenference Room A
Chair: Young-Ki Paik, HUPO President, Yonsei Proteome Research Center, Yonsei University, Korea

Panels: Rolf Apweiler, John J.M. Bergeron, Catherine Costello, Sam Hanash, Pierre Legrain, Gil S. Omenn, Young Mok Park, Henry Rodriguez, Mathias Uhlen, and Alexander Archakov
(The list of panels can be updated)


- Closing Remarks from Secretary General and President (Bong-Hee Lee and Jong- Shin Yoo)
- Commencement ceremony of Young Scientist Awards and other Awards
- Lottery events to participants who have certain signed pass